Topic 167

cochlea basilar vibrations ohcs fluid corti mammalian sound frequency outer hair hearing wave stapes footplate vibration db ohc frequencies amplification cochlear significancethe ear systems middle amplifier simplified amplitude graph membrane agree mechanical force directional theory tectorial sub elastic along motion organ bioengineering ossicles eardrum pressure energy scala optical stapedotomy amplitudes electromechanical 1d coupling 400 millisecond piston acoustic model next healthy sounds generated attributes done electrical binarized directionality synchrony inner hernandez misinformed alquicira part physical enables synchronized qualitatively prosthesis synchronization propagation versus attachment power essential hz weighted resynchronization difference mechanism ising_programs barricklab amplifying commentary hole nonlinearity coupled postpone pass restriction misunderstandings

23 items. Top items listed below.

A role for tectorial membrane mechanics in activating the cochlear amplifier 167 38 18

A simplified analytical model of sound propagationin the human ear 167 96 15

Why the middle ear piston prosthesis is not effective enough and how to change it? 167 96 15

Amplification lags nonlinearity in the recovery from reduced endocochlear potential 167

Sound transmission by chamber prosthesis of the middle ear 167 96 15

Kinetic Membrane Model of Outer Hair Cells 167 127 38 18 8

Active outer hair cell motility can suppress vibrations in the organ of Corti 167

A flexible anatomic set of mechanical models for the organ of Corti 167 18

Connectivity for Rapid Synchronization in a Neural Pacemaker Network 167 38 2

Synchronized oscillations, metachronal waves, and jammed clusters in sterically interacting active filament arrays 167 38 8

Lung-to-ear sound transmission does not improve directional hearing in green treefrogs (Hyla cinerea) 167 15

Generating synthetic aging trajectories with a weighted network model using cross-sectional data 167 38 4

Glassiness in cellular Potts model of biological tissue is controlled by disordered energy landscape 167 127 38 8

Mechanisms of signalling-memory governing progression through the eukaryotic cell cycle 167 46 38

COSI for label-free multiparameter quantitative imaging of intra-thrombus stability in vitro. 167 18

Centromere-specific antibody-mediated karyotyping of Okinawan Oikopleura dioica suggests the presence of three chromosomes. 167

Sites of Vulnerability on Ricin B Chain Revealed through Epitope Mapping of Toxin-Neutralizing Monoclonal Antibodies 167 8

Integrative proteomics reveals exceptional diversity and versatility of mammalian humoral immunity 167 45 24 8

AmpliconReconstructor: Integrated analysis of NGS and optical mapping resolves the complex structures of focal amplifications in cancer 167 97 4

A collection of programs for one-dimensional Ising analysis of linear repeat proteins with point substitutions 167 13 4

PhyloBrain atlas: a cortical brain MRI atlas following a phylogenetic approach 167 22 2

Synthetic mycobacterial molecular patterns partially complete Freund's adjuvant 167

Dynamics of mechanically coupled hair-cell bundles of the inner ear 127 38 18

Additional analyses exploring the hypothesized transdifferentiation of plasmablasts to developing neutrophils in severe COVID-19 167 88

Novel tunable spatio-temporal patterns from a simple genetic oscillator circuit 38 18

Radixin modulates stereocilia function and contributes to cochlear amplification

Dynamics of a neuronal pacemaker in the weakly electric fish Apteronotus 38 2

Striatin is required for hearing and affects inner hair cells and ribbon synapses 102 34 3

Theta-nested gamma oscillations in next generation neural mass models 42 38 2

A Parallel Ratchet-Stroke Mechanism Leads to an Optimum Force for Molecular Motor Function. 127 38 8

Computational principles of neural adaptation for binaural signal integration 50 23 2

Elastohydrodynamical instabilities of active filaments, arrays and carpets analyzed using slender body theory 38 18

Complementary effects of adaptation and gain control on sound encoding in primary auditory cortex 23 2

Exploring the Sequence Fitness Landscape of a Bridge Between Protein Folds 149 91 38 8 4

Contrasting mechanisms for hidden hearing loss: synaptopathy vs myelin defects 11 2

Neuronal resonance can be generated independently at distinct levels of organization 50 38 11 2

Simulating flow induced migration in vascular remodelling 94 38 18

Three-Dimensional Label-Free Imaging and Quantification of Migrating Cells during Wound Healing 70 18 4

The Derived-Band Envelope Following Response and its Sensitivity to Sensorineural Hearing Deficits 15

Role of cell polarity dynamics and motility in pattern formation due to contact dependent signalling 55 38 8

Conformational state switching and pathways of chromosome dynamics in cell cycle 7

Resistive force theory and wave dynamics in swimming isolated flagellar apparatus 127 38 8

Computational Tool for Ensemble Averaging of Single-Molecule Data 62 18 4

Assessing in vivo mutation frequencies and creating a high-resolution genome-wide map of fitness costs of Hepatitis C virus 21 5

Transcriptional kinetic synergy: a complex landscape revealed by integrating modelling and synthetic biology 31 8

Identifying optimal working points of individual Virtual Brains: A large-scale brain network modelling study 22 2

Dynamic bistable switches enhance robustness and accuracy of cell cycle transitions 38 8

From local resynchronization to global pattern recovery in the zebrafish segmentation clock 118 7

Model for Deformation of Cells from External Electric Fields at or Near Resonant Frequencies 38 18

Mechanical Heterogeneity in the Bone Microenvironment as Characterised by Atomic Force Microscopy 18

Embryonic Tissues as Active Foams 127 38 8

Predicting global dynamics of spatial microbial communities from local interaction rules 158 99 38 17 5

Dynamical Ising model of spatially-coupled ecological oscillators 38 17 5

Genuine cross-frequency coupling networks in human resting-state electrophysiological recordings 42 22 2

Environmental and morphological constraints interact to drive the evolution of communication signals in frogs 132 21 5

The intrinsically disordered N-terminus of the voltage-dependent anion channel 91 78 8

Uncovering modeling features of viral replication dynamics from high-throughput single-cell virology experiments 38 21 4

HippoUnit: A software tool for the automated testing and systematic comparison of detailed models of hippocampal neurons based on electrophysiological data 62 4 2

Biological network growth in complex environments - a computational framework 38 18 4

The Roles of Space and Stochasticity in Computational Simulations of Cellular Biochemistry: Quantitative Analysis and Qualitative Insights 38 4

Single-cell characterization of the eukaryotic transcription cycle using live imaging and statistical inference 18 4

Changes in Sound Localization Performance of Single-Sided Deaf Listeners after Visual Feedback Training in Azimuth 23 2

Membrane bending by protein phase separation 78 8

A systems-biology approach to molecular machines: Exploration of alternative transporter mechanisms 38 8 4

Theta-gamma coupling depends on breathing rate 42 2

Identification and characterization of key long non-coding RNAs in the mouse cochlea 120 9

Local Field Potentials in a Pre-motor Region Predict Learned Vocal Sequences 2

Comparative performance of mutual information and transfer entropy for analyzing the balance of information flow and energy consumption at synapses 38 2

Protein-DNA target search relies on Quantum Walk 38 8

Active probing to highlight approaching transitions to ictal states in coupled neural mass models 124 38 2

Studying models of balancing selection usingphase-type theory 21 5 4

Hierarchical modeling of haplotype effects based on a phylogeny 83 4

DNN-Assisted Statistical Analysis of a Model of Local Cortical Circuits 38 26 4 2

When Two are Better than One: Modeling the Mechanisms of Antibody Mixtures 38 4

Emergence and Propagation of Epistasis in Metabolic Networks 38 21 5

Dynamics of chromosomal target search by a membrane-integrated one-component receptor 127 8 3

Transcription Co-Factor LBH Is Necessary for Maintenance of Stereocilia Bundles and Survival of Cochlear Hair Cells 120 3

A network model of the barrel cortex combined with a differentiator detector reproduces features of the behavioral response to single-neuron stimulation. 50 11 2

Stochastic synchronization of dynamics on the human connectome 38 2

Learning to synchronize: Midfrontal theta dynamics during rule switching 42 23 2

The nonlinear structure of linkage disequilibrium 145 38 21 5 4

A physicochemical model of odor sampling 38 23 2

Deciphering the Signaling Network Landscape of Breast Cancer Improves Drug Sensitivity Prediction 179 14 9

A stochastic model of gene expression with polymerase recruitment and pause release 127 38

Mechanosensitive calcium signaling in filopodia 55 3

Social interaction and network structure in groups of Drosophila are shaped by prior social experience and group composition 38 30 2

Hierarchical Markov Random Field model captures spatial dependency in gene expression, demonstrating regulation via the 3D genome 89 31 4

Rapid changes in brain activity during learning of grapheme-phoneme associations in adults 23 2

Idealized model of the developing visual cortex 50 11 2

Endogenous SIRT3 activity is dispensable for normal hearing recovery after noise exposure in young adult mice 11 3

Cell-to-cell diversification in ERBB-RAS-MAPK signal transduction that produces cell-type specific growth factor responses 38

Complexity of intrinsic brain dynamics shaped by multiscale structural constraints 22 2

Detection of complex genetic architecture using two-locus population differentiation: modeling epistasis 19 9 4

Local homeostatic regulation of the spectral radius of echo-state networks 38 2

The effect of stimulus intensity on neural envelope tracking 42 23 2

Bacterial single-cell genomics enables phylogenetic analysis and reveals population structures from in vitro evolutionary studies 107 52 12 9 5 4

Impact of force function formulations on the numerical simulation of centre-based models 38 18 4

Role of intercellular coupling and delay on the synchronization of genetic oscillators 38 20

Effective Biophysical Modeling of Cell Free Transcription and Translation Processes 38 4

From graph topology to ODE models for gene regulatory networks 38 4