Topic 120

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Characterization of the nuclear and cytosolic transcriptomes in human brain tissue reveals new insights into the subcellular distribution of RNA transcripts 120 9 3

Mouse Aging Cell Atlas Analysis Reveals Global and Cell Type Specific Aging Signatures 120 43 9

Single-cell transcriptomic analysis identifies neocortical developmental differences between human and mouse 120 43 9 3

Global Dynamic Molecular Profiles of Stomatal Lineage Cell Development by Single-Cell RNA Sequencing 120 9 3

Single-cell transcriptome profiling an adult human cell atlas of 15 major organs 120 9 3

Transcriptional and Cellular Diversity of the Human Heart 120 9

A systematic dissection of human primary osteoblasts in vivo at single-cell resolution 120 43 9 3

Sex and estrogen receptor β have modest effects on gene expression in the mouse brain posterior cortex 56 9 2

Transcriptome profiling of the Olig2-expressing astrocyte subtype reveals their unique molecular signature 120 9 3

Definition and Signatures of Lung Fibroblast Populations in Development and Fibrosis in Mice and Men 148 120 57 9 3

Functional impact and regulation of global alternative splicing patterns in heart development and disease 120 9 3

Transcriptomic profiling of human effector and regulatory T cell subsets identifies predictive population signatures 88 27 9 3

Gene expression in the cardiovascular system of the domestic sheep (Ovis aries); a new tool to advance our understanding of cardiovascular disease. 120 9

A limited set of transcriptional programs define major cell types 148 120 9

Sex differences in the human brain transcriptome of cases with schizophrenia 120 9

The impact of chromatin remodeling on gene expression at the single cell level in Arabidopsis thaliana 43 31 9 3

A mouse tissue atlas of small non-coding RNA 120 9

A reference single-cell transcriptomic atlas of human skeletal muscle tissue reveals bifurcated muscle stem cell populations 148 120 43 9 3

Chemogenetic activation of astrocytes in the hippocampus and cortex changes the transcriptome of microglia and other cell types. 120 11 3

Identification and functional analysis of long non-coding RNAs in autism spectrum disorders 9

Transcriptome profiling of the branchial arches reveals cell type composition and a conserved signature of neural crest cell invasion 120 118 20 9 3

A spatiotemporal translatome of mouse tissue development 120 9

Single cell RNA-Seq analysis identifies molecular mechanisms controlling hypothalamic patterning and differentiation. 43 20 9 3

Deciphering cellular transcriptional alterations in Alzheimer's disease brains 32 9 4

The landscape of molecular chaperones across human tissues reveals a layered architecture of core and variable chaperones 120 9 3

Single-cell analyses of the corneal epithelium: Unique cell types and gene expression profiles 148 120 20 9 3

A molecular cell atlas of the human lung from single cell RNA sequencing 120 9

Tissue-specific expression of young small-scale duplications in human central nervous systemregions 120 9 5

A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation 120 43 9

Heterogeneity of Neuroepithelial Cells and Radial Glia 133 120 20 9

Tissue-specific transcriptome profiling of the Arabidopsis thaliana inflorescence stem reveals local cellular signatures. 120 9 3

Transcriptional profile of pyramidal neurons in chronic schizophrenia reveals lamina-specific dysfunction of neuronal immunity 120 11 9

Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis 43 9 4

Single Cell Transcriptomics Reveals Dysregulated Cellular and Molecular Networks in a Fragile X Syndrome Model 120 9

Full-length transcript sequencing of human and mouse identifies widespread isoform diversity and alternative splicing in the cerebral cortex 9

Transcription initiation mapping in 31 bovine tissues reveals complex promoter activity, pervasive transcription, and tissue-specific promoter usage 134 9

Single cell RNA sequencing reveals the landscape of early female germ cell development 120 20 9 3

Single-Cell Transcriptomic Analysis Reveals Molecular Diversity of Human Oligodendrocyte Progenitor Cells 133 120 9 3

Integrated analysis of high throughput transcriptomic data revealed specific gene expression signature of cardiomyocytes 172 120 57 9

Single cell transcriptomic profiling identifies molecular phenotypes of newborn human lung cells 148 120 9

Single-cell analysis of patient-derived PDAC organoids reveals cell state heterogeneity and a conserved developmental hierarchy 152 14 9 3

Secondary analysis of transcriptomes of SARS-CoV-2 infection models to characterize COVID-19 73 9 1

Integrative transcriptomic analysis of SLE reveals IFN-driven cross-talk between immune cells 175 120 9

Single nuclei chromatin profiles of ventral midbrain reveal cell identity transcription factors and cell type-specific gene regulatory variation 9 3

Transcriptomics, metabolomics and lipidomics of chronically injured alveolar epithelial cells reveals similar features of IPF lung epithelium 120 95 9 3

Dissecting Mammalian Spermatogenesis Using Spatial Transcriptomics 148 43 9

Transcriptomic Analysis of Early Stages of Intestinal Regeneration in Holothuria glaberrima 120 9 3

Age influences aggressive behaviour: an RNA-seq analysis in bovines 120 9 2

Single-cell transcriptomes of developing and adult olfactory receptor neurons in Drosophila 120 11 9 2

Comprehensive evaluation of human brain gene expression deconvolution methods 175 43 9 4

Gene co-expression analysis of human RNASEH2A reveals functional networks associated with DNA replication, DNA damage response, and cell cycle regulation 120 9 3

A novel single-cell based method for breast cancer prognosis 43 26 4

Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis 120 20 9 3

Renal proximal tubule cell state and metabolism are coupled by nuclear receptors 120 9 3

Decoding molecular markers and transcriptional circuitry of naive and primed states of human pluripotency 120 9

Single-cell RNA-seq of the stromal vascular fraction of adipose tissue reveals lineage-specific changes in cancer-related lymphedema 120 9 3

CytoTalk: De novo construction of signal transduction networks using single-cell RNA-Seq data 43 9 4

Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers 120 43 9

Comprehensive analysis of HIV elite controllers and progressors' transcriptional profiles from CD8+ T lymphocytes demonstrates heterogeneity of pathways and master regulators, which may be essential for disease nonprogression 120 9 3

Mapping multicellular programs from single-cell profiles 43 9

Transcriptomic signatures associated with regional cortical thickness changes in Parkinson's disease 120 9

Systematic investigation of imprinted gene expression and enrichment in the mouse brain explored at single-cell resolution 120 43 9

The transcriptional landscape of Venezuelan equine encephalitis virus (TC-83) infection 41 9

Transcriptional Profiling Reveals the Transcription Factor Networks Regulating the Survival of Striatal Neurons 120 9 3

Bifidobacterium breve UCC2003 induces a distinct global transcriptomic programme in neonatal murine intestinal epithelial cells 120 57 27 10 3

Transcriptional profiling of Multiple System Atrophy cerebellar tissue highlights differences between the parkinsonian and cerebellar sub-types of the disease 32 9

Transcriptome and epigenome characterization of mouse spermatogonial cells reveals distinct chromatin regulatory landscapes in postnatal and adult testis 31 9 3

Gene regulatory network of human GM-CSF secreting T helper cells 31 9 3

Molecular, spatial and projection diversity of neurons in primary motor cortex revealed by in situ single-cell transcriptomics 116 50 11 9 2

Dynamic Analysis of Alternative Polyadenylation from Single-Cell RNA-Seq(scDaPars) Reveals Cell Subpopulations Invisible to Gene Expression Analysis 43 9 4 3

Characterization and analysis of the transcriptome in Arapaima gigas using multi-tissue RNA-sequencing 120 9

Evidence for oligodendrocyte progenitor cell heterogeneity in the adult mouse brain. 120 57 9

Single cell epigenomic atlas of the developing human brain and organoids 133 120 20 9 3

Molecular development of muscle spindle and Golgi tendon organ sensory afferents revealed by single proprioceptor transcriptome analysis 120 116 9

Drosophila models of pathogenic copy-number variant genes show global and non-neuronal defects during development 120 9

Transcriptional Difference between SARS-COV-2 and other Human Coronaviruses Revealed by Sub-genomic RNA Profiling 120 9 1


Single cell analysis of colorectal cancer identifies mitogen-activated protein kinase as a key driver of tumor cell plasticity 152 148 142 14 9 3

Integrative genomic strategies applied to a lymphoblast cell line model reveal specific transcriptomic signatures associated with clozapine response 9 3

Identification and characterization of key long non-coding RNAs in the mouse cochlea 120 9

Differential regulation of the immune system in a brain-liver-fats organ network during short term fasting 120 9 3

Whole-organism mapping of the genetics of gene expression at cellular resolution 19 9 4

Parallel RNA and DNA analysis after Deep-sequencing (PRDD-seq) reveals cell type-specific lineage patterns in human brain 133 120 9

Transcriptome analysis of somatic cell populations in the Drosophila testis links metabolism and stemness 120 9 3

Studies on trans-sutural distraction osteogenesis-related genes based on transcriptome sequencing 120 9

Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury 120 9 3

A new synuclein-transgenic mouse model for early Parkinson's reveals molecular features of preclinical disease 54 11 9 3

The landscape of mouse epididymal cells defined by the single-cell RNA-Seq 120 9

Transcriptomic homogeneity and an age-dependent onset of hemoglobin expression characterize morphological PV types 120 9

Probabilistic gene expression signatures identify cell-types from single cell RNA-seq data 43 4

An atlas of cell types in the mammalian epididymis and vas deferens 120 9 3

TATA and paused promoters active in differentiated tissues have distinct expression characteristics 31 9

Global computational alignment of tumor and cell line transcriptional profiles 43 14 9 4

Human microglia upregulate cytokine signatures and accelerate maturation of neural networks 57 20 9 3

Towards understanding the regulation of histone H1 somatic subtypes with OMICs. 31 9 3

Widespread diversity in the transcriptomes of functionally divergent limb tendons 120 9

Single-cell RNA sequencing of human, macaque, and mouse testes uncovers conserved and divergent features of mammalian spermatogenesis 120 57 20 9 3

Comprehensive single cell analysis of pandemic influenza A virus infection in the human airways uncovers cell-type specific host transcriptional signatures relevant for disease progression and pathogenesis. 73 27 9 1

Atlas of tissue-specific and tissue-preferential gene expression in ecologically and economically significant conifer Pinus sylvestris 120 9 5 4

scTPA: A web tool for single-cell transcriptome analysis of pathway activation signatures 43 4