Function reference • weitrix

Create weitrix
`as_weitrix()`	Convert data to a weitrix
`bless_weitrix()`	Bless a SummarizedExperiment as a weitrix
`counts_shift()`	Produce a weitrix of shift scores
`counts_proportions()`	Produce a weitrix of proportions within groups
Access or cast weitrix
`weitrix_x()` `weitrix_x<-`()	Get or set a weitrix object's "x" matrix
`weitrix_weights()` `weitrix_weights<-`()	Get or set a weitrix object's "weights" matrix
`weitrix_elist()`	Convert a weitrix object to a limma EList object
Summary statistics and calibration
`weitrix_calibrate_all()`	Adjust weights element-wise by fitting a trend to squared residuals
`weitrix_calibrate_trend()`	Adjust weights row-wise by fitting a trend to estimated dispersions
`weitrix_calibrate()`	Adjust weights row-wise based on given row dispersions
`weitrix_dispersions()`	Calculate row dispersions
`weitrix_calplot()`	Weight calibration plots, optionally versus a covariate
`weitrix_hill()`	Calculate Hill numbers (effective number of observations) for rows or columns
Statistical testing
`weitrix_confects()`	Top confident effects based on one or more contrasts of a linear model for each row
`weitrix_sd_confects()`	Find rows with confidently excessive variability in a calibrated weitrix
Components
`weitrix_components()` `weitrix_components_seq()`	Principal components of a weitrix
`components_seq_scree()` `components_seq_screeplot()`	Proportion more variance explained by adding components one at a time
Other
`well_knotted_spline()`	Natural cubic spline with good choice of knots
`weitrix_randomize()`	Generate a random normally distributed version of a weitrix
`matrix_long()`	Convert a matrix to long form for ggplotting
`simwei`	Simulated weitrix dataset.

Reference

Create weitrix

Access or cast weitrix

Summary statistics and calibration

Statistical testing

Components

Other