weitrix_sd_confects now has an option to drop the assumption of normally distributed weighted residuals.
weitrix 1.1.10
Fix bug with weitrix_confects due to [[ ]] <- NULL deleting elements from a list instead of storing NULL in the list.
weitrix 1.1.9
Peaks were sometimes in reverse order in APA example, data file updated.
Try to get rid of an odd new build error about stack usage by using serial processing in vignettes.
weitrix 1.1.8
Use geom_bin2d in weitrix_calplot scatterplots.
weitrix 1.1.7
Add mu_min, mu_max arguments to weitrix_calibrate_all.
weitrix 1.1.6
Use glm2, which is less prone to optimization failure.
Auto-disable parallel processing if X11 device is open.
Add SLAM-Seq vignette.
weitrix 1.1.5
well_knotted_spline for natural splines with good choice of knots.
weitrix 1.1.4
weitrix_confects for differential testing.
weitrix_rms_confects now called weitrix_sd_confects.
weitrix_calplot now shows mean trend and mean +/- standard deviation trend.
weitrix 1.1.3
weitrix_calibrate_all now includes a simple scaling factor to account for residuals from a fitted model being smaller than residuals from the true model.
weitrix_calplot blue guidelines are similarly adjusted.
Add weitrix_rms_confects to find rows with confidently excessive variation.
weitrix 1.1.2
Vignettes use weitrix_calibrate_all, demonstrate weitrix_calplot.
weitrix_calplot now uses sqrt(weight)*residual on y axis.
weitrix 1.1.1
Switch calibration from linear model on log dispersions to using a gamma GLM.
Add weitrix_calibrate_all function for very flexible calibration.
Add weitrix_calplot to examine quality of weights.
weitrix 0.99.2
Automatic package builder wants package to depend on R version 4.0.
weitrix 0.99.1
weitrix now uses the BiocParallel default parallel processing, rather than the DelayedArray default. (DelayedArray does not use parallel processing by default as of version 0.14.0.)