Topic 53

breeding plant crop traits yield genetic trait selection genotypes grain qtl varieties genetics cultivars wheat germplasm accessions programs improvement variation genomic loci lines crops population cultivated phenotypic markers mapping genotype phenotyping breeders domestication were rice snp panel elite identified leaf diversity quantitative maize inbred environments agronomic genome candidate association seed genes quality grown qtls chromosome flowering snps marker triticum was genotyping significant food architecture tolerance high tolerant basis landraces four resistance three will wide aestivum linkage weight production barley under content total plants identification alleles assisted genotyped field hybrids cultivar selected improve two biology genotypic prediction climate parents evaluated five

267 items. Top items listed below.

A global barley panel revealing genomic signatures of breeding in modern cultivars 53 5

Genotyping by sequencing for identification and mapping of QTLs for bioenergy-related traits in sweet sorghum 53 19 9 5

Grain number and genotype drive nitrogen-dependent yield response in the C4 model Setaria italica (L.) P. Beauv. 53 5

Validation of Functional Polymorphisms Affecting Maize Plant Height by Unoccupied Aerial Systems (UAS) allows Novel Temporal Phenotypes 53 19 5

Genome-wide association analysis reveals new insights into the genetic architecture of defensive, agro-morphological and quality-related traits in cassava 53 19 9 5

Genetic structure of Photosystem II functionality in rice unraveled by GWAS analysis 53 19 16 5

QTL mapping reveals genomic regions for yield based on incremental tolerance index to drought stress and related agronomic traits in canola 53 19 5

Aerial High-Throughput Phenotyping Enabling Indirect Selection for Grain Yield at the Early-generation Seed-limited Stages in Breeding Programs 53 5 4

A systems genetics approach reveals environment-dependent associations between SNPs, protein co-expression and drought-related traits in maize 53 19 9 5

Combination of favorable gene haplotypes plays an important role in rice hybrid grain quality traits based on genome-wide association analysis 53 19 5

Using high-throughput phenotypes to enable genomic selection by inferring genotypes 145 53 19 4

Genome-wide mapping and prediction of plant architecture in a sorghum nested association mapping population 53 19 9 5

Discovery of novel haplotypes for complex traits in landraces 53 19 5

Development and Use of miRNA-derived SSR Markers to Study Genetic Diversity, Population Structure and Characterization of Genotypes for Heat Tolerance Breeding in Bread Wheat (Triticum aestivum L.) 53 16 5

Salt tolerance QTL derived from the Bangladeshi landrace Horkuch 53 5

The wheat 55K SNP-based exploration of loci for spikelet number per spike from a tetraploid wheat (Triticum turgidum L.) recombinant inbred line population derived from a Chinese landrace Ailanmai and a wild emmer accession 53 19 5

Loss of Photosynthetic Rhythm Thermal Plasticity Under Domestication and RepurposingDrivers of Circadian Clock (DOC) Loci for Adaptive Breeding in Barley 53 19 5

Genome-wide association study reveals the genetic architecture of 27 yield-related traits in tomato 53 19 16 9 5

Gene-based mapping of trehalose biosynthetic pathway genes reveals association with source- and sink-related yield traits in a spring wheat panel 53 19 5

A combined BSA-Seq and linkage mapping approach identifies genomic regions associated with Phytophthora root and crown rot resistance in squash 53 19 5

Modeling multiple phenotypes in wheat using data-driven genomic exploratory factor analysis and Bayesian network learning 53 19 4

Modelling selection response in plant breeding programs using crop models as mechanistic gene-to-phenotype (CGM-G2P) multi-trait link functions 53 5

A multiple ion-uptake phenotyping platform reveals shared mechanisms that affect nutrient uptake by maize roots 53 16 5

Sequencing depth and genotype quality: Accuracy and breeding operation considerations for genomic selection applications in autopolyploid crops 53 19 4

Pangenome of white lupin provides insights into the diversity of the species 53 40 5

Genomic selection to optimize doubled haploid-based hybrid breeding in maize 53 5 4

Genome wide identification of QTL associated with yield and yield components in two popular wheat cultivars TAM 111 and TAM 112 53 19 5

Evidence of selection, adaptation and untapped diversity in Vietnamese rice landraces 53 5

Genetics of phosphorus use efficiency in a MAGIC wheat population grown in the field 53 5

Linkage mapping and QTL analysis of flowering time using ddRAD sequencing with genotype error correction in Brassica napus 53 19 5

Limited haplotype diversity underlies polygenic trait architecture across 70 years of wheat breeding 53 19 5 4

Genome-wide association and prediction studies using a grapevine diversity panel give insights into the genetic architecture of several traits of interest 53 19 5 4

Genome-wide SNP detection in Darjeeling tea: unravelling genetic structure, functional impact and trait associations 53 19 9 5 4

Gene disruption by structural mutations drives selection in US rice breeding over the last century 53 21 5

Machine learning approaches reveal genomic regions associated with sugarcane brown rust resistance 53 26 4

Comprehensive genotyping of Brazilian Cassava (Manihot esculenta Crantz) Germplasm Bank: insights into diversification and domestication 53 19 5

Correlation and co-localization of QTL for stomatal density and canopy temperature under drought stress in Setaria 53 5

Genome-Wide Association Mapping of Sugarcane Yellow Leaf Virus Resistance 53 19 9 5

Optimized cultivar deployment improves the efficiency and stability of sunflower crop production at national scale 53 17 5 4

Ten Genetic Loci Identified for Milk Yield, Fat, and Protein in Holstein Cattle 19 9 5 4

Genomic basis of transcriptome dynamics in rice under field conditions 53 4

Eleven biosynthetic genes explain the majority of natural variation for carotenoid levels in maize grain 53 19 9 5

Meta-GWAS for quantitative trait loci identification in soybean 53 19 9 5

Multi-trait regressor stacking increased genomic prediction accuracy of sorghum grain composition 53 5 4

Modelling illustrates that genomic selection provides new opportunities for intercrop breeding 53 5 4

Genetic architecture and gene mapping of cyanide in cassava (Manihot esculenta Crantz.) 53 19 16 5

Defining Strawberry Uniformity using 3D Imaging and Genetic Mapping 53 4

Genomic patterns of introgression in interspecific populations created by crossing wheat with its wild relative 53 5

Effects of breeding history and crop management on the root architecture of wheat 53 5

Genomic prediction for malting quality traits in practical barley breeding programs 53 5 4

A novel tolerance index to identify heat tolerance in cultivated and wild barley genotypes 53 5

Prediction of complex phenotypes using the Drosophila metabolome 53 9 5 4

Agro-morphological, yield, and genotyping-by-sequencing data of selected wheat germplasm 53 25 5 4

The Genetic Architecture of Leaf Stable Carbon Isotope Composition in Zea mays and the Effect of Transpiration Efficiency on Elemental Accumulation 159 53 16 5

Genetic variation for tolerance to the downy mildew pathogen Peronospora variabilis in genetic resources of quinoa (Chenopodium quinoa) 53 19 5

Fonio millet genome unlocks African orphan crop diversity for agriculture in a changing climate 53 5

Evaluation of Genetic Diversity in Cultivated and Exotic Germplasm Sources of Faba Bean Using Important Morphological Traits 53 5

Mapping quantitative trait loci and predicting candidate genes for leaf angle in maize 53 19 9 5

Genomic selection strategies for clonally propagated crops 53 5 4

Genetic basis of phenotypic plasticity and genotype x environment interaction in a multi-parental population 53 5

Factors affecting Response to Recurrent Genomic Selection in Soybeans 53 19 5 4

Genome-wide association study of flowering time reveals complex genetic heterogeneity and epistatic interactions in rice 19 5

Genomic prediction of arsenic tolerance and grain yield in rice. Contribution of trait-specific markers and multi environment models 53 19 5

Genotypic differences in wheat yield determinants within a NAM population based on elite parents 53 15 5

Integration of high-density genetic mapping with transcriptome analysis uncovers numerous agronomic QTL and reveals candidate genes for the control of tillering in sorghum 53 7 5

Key traits and genes associate with salinity tolerance independent from vigor in cultivated sunflower (Helianthus annuus L.) 193 106 53 16 5

Genome wide association study pinpoints key agronomic QTLs in African rice Oryza glaberrima 53 5

Delaying or Delivering: Identification of novel NAM-1 alleles which delay senescence to extend grain fill duration of wheat 53 19 9 5

Large scale genome-wide association study reveals that drought induced lodging in grain sorghum is associated with plant height and traits linked to carbon remobilisation 53 19 5

Genetic mapping of the early responses to salt stress in Arabidopsis thaliana 16 9

Multi-trait random regression models increase genomic prediction accuracy for a temporal physiological trait derived from high-throughput phenotyping 53 4

A Genomics Resource for Genetics, Physiology, and Breeding of West African Sorghum 53 19 5

Genetic architecture of oxidative stress tolerance in the fungal wheat pathogen Zymoseptoria tritici 53 5

Phenological, Physiological and yield markers as efficient tools to identify drought tolerant rice genotypes in Eastern India 53 16 15 5

Identification of genetic factors controlling phosphorus utilization efficiency in wheat by genome-wide association study with principal component analysis 53 19 9 5

Multi-model evaluation of phenology prediction for wheat in Australia 182 53 5 4

Transcriptomic expression patterns of two contrasting lowland rice varieties reveal high iron stress tolerance 53 16 9 5

QTL mapping for aggressiveness variation in F. graminearum revealed one causal mutation in FgVe1 velvet protein 53 12 5

Patterns of genetic variation in a prairie wildflower, Silphium integrifolium, suggest a non-prairie origin and locally adaptive variation. 53 5

Resistance to tembotrione, a 4-hydroxyphenylpyruvate dioxygenase-inhibitor, in Sorghum bicolor 53 16

Local adaptation contributes to gene expression divergence in maize 21 5

Response of Regulatory Genetic Variation in Gene Expression to Environmental Change in Drosophila melanogaster 134 19 9 5

cis dominantly explains regulatory divergence between two indica rice genotypes; drought further enhances regulatory differences 53 9 5

Functional principal component based time-series genome-wide association in sorghum 19 9 5 4

Deep sampling and pooled amplicon sequencing reveals hidden genic variation in heterogeneous rye accessions 53 5 4

Identification of QTLs for dynamic and steady state photosynthetic traits in a barley mapping population 53 16 5

Reproductive tissues-specific meta-QTLs and candidate genes for development of heat-tolerant rice cultivars 53 9 5

Genome-wide identification and transcriptional analyses of MATE transporter genes in root tips of wild Cicer spp. under aluminium stress 53 16 9 5

The recombination landscape and multiple QTL mapping in a Solanum tuberosum cv. 'Atlantic'-derived F1 population 53 19 5

Grain Fe and Zn Contents Linked SSR Markers Based Genetic Diversity Reveal Perspective for Marker Assisted Biofortification Breeding in Rice 53 5

A High Throughput Gravimetric Phenotyping Platform for Real Time Physiological Screening of Plant Environment Dynamic Responses 53 18 4

Uncovering candidate genes involved in photosynthetic capacity using unexplored genetic variation in Spring Wheat 53 19 5

Characterization of a late blight resistance gene homologous to R2 in potato variety Payette Russet 53 5

Population sequencing enhances understanding of tea plant evolution 53 40 5

Temporal dynamics of QTL effects on vegetative growth in Arabidopsis thaliana 53 16 9 5

Voxel Carving Based 3D Reconstruction of Sorghum Identifies Genetic Determinants of Radiation Interception Efficiency 53 4

QTL mapping in an interspecific sorghum population uncovers plasma-membrane intrinsic proteins as key regulators of salinity tolerance 53 16 5

Mapping QTL for spike fertility related traits in two double haploid wheat (Triticum aestivum L.) populations 53 5

Identifying genomic markers associated with female re-mating rate in Drosophila pseudoobscura by replicated bulk segregant analysis. 19 5 4

Genomic prediction in the wild: A case study in Soay sheep 145 19 5 4