Produce an interactive Shiny report showing diagnostic plots of transformed counts.
Usage
shiny_report(
y = NULL,
counts = NULL,
sample_labels = NULL,
feature_labels = NULL,
prefix = ""
)
Arguments
- y
A matrix of exprssion levels, such as a transformed counts matrix.
- counts
Original counts.
- sample_labels
Optional. Sample names.
- feature_labels
Optional. Feature names.
- prefix
Optional, to facilitate use as a component of a larger Shiny app. Inputs and outputs are given this prefix.
Value
A shiny.appobj.
Either y or counts or both must be given.
Used interactively, the shiny report runs immediately. Otherwise it can be launched by print()-ing it. A call to this function can also be the last line in an app.R file in a Shiny app directory.
Examples
# Generate some random data.
means <- runif(100,min=0,max=1000)
counts <- matrix(rnbinom(1000, size=1/0.01, mu=rep(means,10)), ncol=10)
y <- varistran::vst(counts)
#> Dispersion estimated as 0.01179519
if (interactive())
varistran::shiny_report(y, counts)