Single-cell RNA-Seq gene expression of 2,816 mouse brain cells (Zeisel, 2015). The top 10 principal components were produced using the steps in the Bioconductor OSCA workflow.
Usage
data(zeiselPC)Format
A data frame with 2,816 rows representing brain cells and 11 columns:
- type
Cell type.
- PC1
Principal component score.
- PC2
Principal component score.
- PC3
Principal component score.
- PC4
Principal component score.
- PC5
Principal component score.
- PC6
Principal component score.
- PC7
Principal component score.
- PC8
Principal component score.
- PC9
Principal component score.
- PC10
Principal component score.
References
Zeisel, A., Muñoz-Manchado, A. B., Codeluppi, S., Lönnerberg, P., La Manno, G., Juréus, A., Marques, S., Munguba, H., He, L., Betsholtz, C., Rolny, C., Castelo-Branco, G., Hjerling-Leffler, J., & Linnarsson, S. (2015). Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq. Science, 347(6226), 1138–1142. doi:10.1126/science.aaa1934
Examples
data(zeiselPC)
langevitour(zeiselPC[,-1], zeiselPC$type)