Dr. Paul Harrison


Home page of Dr. Paul Harrison. I currently work for the Monash Bioinformatics Platform.



PGP public key
Fingerprint B829 F851 00B7 9CB7 6897 DCA7 A881 5DA8 5150 5ABF

Bioinformatics software

Topconfects: R package. Top differential expression by confident effect size. A more intuitive way to use "TREAT".

Varistran: R package. Variance stabilizing transformation for RNA-Seq data. This is a useful pre-processing step prior to visualization, and also makes clustering and statistical analysis more straightforward. Includes a shiny app for assessing RNA-seq data quality with heatmap and biplot.

Fitnoise: Python/R. Differential anything analysis with linear models.

Tail-Tools: Analysis pipeline for PAT-Seq data.

Nesoni: Disorganized pile of tools for processing bacterial high-throughput sequencing data.

Plasmodium Autocount and Semiautocount: Cell counting on blood smears.


Publications on Google Scholar.

PhD thesis on image texture synthesis. I also have several publications relating to my PhD work on texture.

Introduction to R and R more (2016) Course notes introducing R, which I have developed and presented with other members of the Monash Bioinformatics Platform.

Linear models, a practical introduction in R (July 2015) A Jupyter notebook.

>> Fun and personal stuff