Main functions

vst()

Variance Stabilizing Transformation

shiny_report()

Shiny report

plot_stability()

Stability plot.

plot_biplot()

Biplot of expression data

plot_heatmap()

Plot a heatmap.

Support functions

call_ui()

Call object with "request" if it is callable.

composable_shiny_app()

Composable Shiny App.

ensure_reactable()

Flexible specification of parameters to shiny apps.

ensure_reactive()

Make a value reactive if it is not already reactive.

heatmap_grob()

A grob for heatmaps.

make_ordering()

Make an object representing an ordering, usually from a hierarchical clustering.

ordering_grob()

Grob to display an ordering as a dendrogram.

plot_biplot()

Biplot of expression data

plot_heatmap()

Plot a heatmap.

plot_stability()

Stability plot.

run_as_gadget()

Run a composable shiny app as a gadget.

shiny_biplot()

Shiny wrapper for plot_biplot

shiny_filter()

Shiny component to filter rows and columns a matrix.

shiny_heatmap()

Shiny wrapper for plot_heatmap

shiny_mds_plot()

Shiny wrapper for limma's MDS plot

shiny_plot() shiny_plot_ui() shiny_plot_server()

Shiny plot.

shiny_report()

Shiny report

shiny_stability()

Shiny wrapper for plot_stability

shiny_vst()

Shiny component to describe the output of a call to vst.

shrinktext_grob()

A collection of horizontal labels which shrink if they get too small.

signed_colors

A red-blue palette suitable for signed data.

unsigned_colors

A palette from cool to hot.

varistran_grob()

Make a grob better.

vertical_shrinktext_grob()

A collection of vertical labels which shrink if they get too small.

vst()

Variance Stabilizing Transformation

vst_advice()

Advise how VST will transform data