Find differential exon usage, etc.
edger_group_confects(fit, group_id, group_effect, fdr = 0.05, step = 0.01) limma_group_confects(object, group_id, group_effect, fdr = 0.05, step = 0.01, trend = FALSE)
For edgeR, an edgeR DGEGLM object.
A factor of length
A group effect object created by one of the A
False Discovery Rate to maintain.
Step size when calculating confident effect sizes.
For limma, an expression matrix or EList object, or anything limma's lmFit will accept.
For limma, should
nest_confects for details of how to interpret the result.
If the order of the members of a group is important, ensure the order of rows is correct in the original matrix.
Groups with less than two members will be ignored.
To construct a group design matrix, the design from
fit will be repeated in a block diagonal matrix.