Find top confident effect sizes

limma_confects()

Confident log2 fold changes based on a limma fit object

edger_confects()

Confident log2 fold change based on the edgeR Quasi-Likelihood method

deseq2_confects()

Confident log2 fold changes based on a DESeq2 analysis

normal_confects()

Confident effect sizes from from normal or t distributions

nest_confects()

General purpose function to find sets of discoveries for a range of effect sizes, controlling FDR

Diagnostic plots

confects_plot()

Top confident effect sizes plot

rank_rank_plot()

A plot to compare two rankings

confects_plot_me()

Mean-expression vs effect size plot